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Philosopher is fast, easy-to-use, scalable, and versatile data analysis software for mass spectrometry-based proteomics. Philosopher is dependency-free and can analyze both traditional database searches and open searches for post-translational modification (PTM) discovery.

Download

Download the latest version here.

How to Use

Documentation

See the documentation for more details about the available commands.

Questions, requests, and bug reports

If you have any questions, remarks, or requests, or if you found a bug, please use the issue tracker.

How to cite

da Veiga Leprevost F, Haynes SE, Avtonomov DM, Chang HY, Shanmugam AK, Mellacheruvu D, Kong AT, Nesvizhskii AI. Philosopher: a versatile toolkit for shotgun proteomics data analysis. Nat Methods. 2020 Sep;17(9):869-870. doi: 10.1038/s41592-020-0912-y. PMID: 32669682; PMCID: PMC7509848.

About the developers

Felipe da Veiga leprevost

Sarah Haynes

Alexey Nesvizhskii’s research group

Questions, requests and bug reports

If you have any questions, remarks, requests or if you found a bug, please use the Issue tracker.

License

GPL 3